@prefix aiiso: . @prefix cc: . @prefix dc1: . @prefix dcat: . @prefix foaf: . @prefix mads: . @prefix org1: . @prefix skos: . @prefix tdwgi: . @prefix vcard: . @prefix void: . @prefix xsd: . a void:DatasetDescription ; cc:license ; foaf:primaryTopic . a dcat:Dataset ; dc1:contributor """Maria Clara Iruzun Martins (NHM, UCL)\r Travis Park (NHM)\r Natalie Cooper (NHM)""" ; dc1:creator [ a vcard:Person ; mads:hasAffiliation ; vcard:fn "Maria Clara Iruzun Martins; Travis Park; Natalie Cooper" ] ; dc1:identifier <10.5519/0091362> ; dc1:issued "2019-08-07T09:45:19.903704"^^xsd:dateTime ; dc1:license ; dc1:modified "2020-10-21T13:34:38.789587"^^xsd:dateTime ; dc1:title "Intraspecific variation in harbour porpoise cochleae" ; dcat:contactPoint ; dcat:description """Data from paper **Intraspecific variation in harbour porpoise (** *Phocoena phocoena* **) cochleae and its implications for comparative studies across odontocetes.**\r \r > Martins MCI, Park T, Racicot R, Cooper N. 2020. Intraspecific variation in the cochleae of harbour porpoises *Phocoena phocoena* and its implications for comparative studies across odontocetes. PeerJ 8:e8916 https://doi.org/10.7717/peerj.8916\r \r The analyses require the two tidied datasets `odontocete-data-landmarks.csv` and `odontocete-data-linear.csv`. Raw data sources used to build these are `cochlea-measurements.csv`, `curves.csv`, `echo-metadata.csv` and landmark data for each species which is either provided here for all *Phocoena phocoena* specimens, or can be found at https://doi.org/10.5519/0082968 for other odontocetes. If you use this larger dataset of landmarks please cite:\r \r > Travis Park, Bastien Mennecart, Loïc Costeur, Camille Grohé, Natalie Cooper (2018). Dataset: Convergent evolution in toothed whale cochleae. Natural History Museum Data Portal (data.nhm.ac.uk). https://doi.org/10.5519/0082968. \r \r More details can be found at https://github.com/nhcooper123/intraspecific-porpoise.""" ; dcat:distribution , , , , , , , , , , , , , , , , , , , , , , , , , ; dcat:keyword "cetaceans", "cochlea", "morphology" ; dcat:landingPage , , , , , , , , , , , , , , , , , , , , , , , , , ; dcat:theme [ a skos:Concept ; skos:prefLabel "Research" ] . a vcard:Person ; mads:hasAffiliation ; vcard:fn "Natalie Cooper" ; vcard:hasEmail . a aiiso:Institution, org1:Organization, foaf:Organization ; tdwgi:acronymOrCoden "NHMUK" ; tdwgi:institutionType ; = , ; foaf:name "Natural History Museum" . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUKSW1937.24_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUKSW1937.24_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUKSW1926.29_2 in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUKSW1926.29_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Needed to build `odonotcete-data-landmarks.csv`. Defines sliders for semilandmarks." ; dc1:format "CSV" ; dc1:title "Sliders for landmarks" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK1934.45_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUK1934.45_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMSW1954.15_2 in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMSW1954.15_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description """This is required to build `odontocete-data-linear.csv`. \r \r - **specID** - Specimen accession number\r - **taxon** - Species binomial \r - **side** - Side of the animal the cochlea came from (Right or Left) \r - **nTurns** - Number of turns of the cochlear canal\r - **volume** - Volume (in mm^3)\r - **cochleaHeight** - Cochlea height (mm) \r - **cochleaWidth** - Cochlea width (mm) \r - **canalLength** - Canal length (mm)\r - **sslLength** - Secondary spiral lamina (SSL) length (mm) \r - **sslExtent** - % of extent of SSL (SSL length/cochlear canal length)*100) \r - **basalRatio** - Basal ratio (cochlear height/cochlear width) \r - **axialPitch** - Axial pitch (cochlear height/number of turns) \r - **W2** - Width of basal turn perpendicular to cochlear width \r - **ITD** - Interturn distance (maximum distance between turns of the cochlea)\r - **maxRadius** - Maximum radius of spiral ganglion (this is omitted from analyses as we do not have records for all specimens)\r - **FC** - Surface area of fenestra cochlearis in (mm^2)""" ; dc1:format "CSV" ; dc1:title "Raw cochleae measurement data" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUKSW1934.14_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUKSW1934.14_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "MANOVAs for all specimen combinations of Phocoena phocoena. Needed for sensitivity analyses only." ; dc1:format "CSV" ; dc1:title "MANOVAs for all specimen combinations" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK1925.4.29.1_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUK1925.4.29.1_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description """- **filename** - name of landmark file for that specimen - required to match up to other data. \r - **specID** - specimen accession number\r - **taxon** - species name\r - **family** - taxonomic family to which species belongs\r - **group** - is the specimen *Phocoena phocoena* or a different species (Other)?\r - **habitat** - the natural environment for that species\r - **habitat1** - as Habitat but all “riverine/nearshore” taxa are classed as “riverine” and “nearshore/oceanic” taxa are classed as “nearshore”\r - **habitat2** - as Habitat, but “riverine/nearshore” taxa are classed as “nearshore” and “nearshore/oceanic” taxa are classed as “oceanic”\r - **feedingr** - how the species usually acquires its prey\r - **feeding1** - as Feeding behaviour, but all “raptorial/suction” taxa are classed as “raptorial”\r - **feeding2** - as Feeding behaviour, but all “raptorial/suction” taxa are classed as “suction”\r - **bodysize** - maximum mass the species obtains\r - **divetype** - the type of dive the species usually makes (Shallow: estimated maximum dive depth ≤ 100 m. Mid: estimated maximum dive depth ~500 m. Deep: estimated maximum dive depth ~1000m. Verydeep: can dive well in excess of 1000 m.)\r - **hearingtype** - the type of hearing used by the species \r - **PC1 - PC12** - Principal component (PC) scores from principal components analysis. These are the PCs that explain up to 95% of the variance in cochlear shape.""" ; dc1:format "CSV" ; dc1:title "Odontocete cochleae linear measurement data " ; dcat:accessURL . a dcat:Distribution ; dc1:description """- **filename** - name of landmark file for that specimen - required to match up to other data. \r - **specID** - specimen accession number\r - **taxon** - species name\r - **family** - taxonomic family to which species belongs\r - **group** - is the specimen *Phocoena phocoena* or a different species (Other)?\r - **habitat** - the natural environment for that species\r - **habitat1** - as Habitat but all “riverine/nearshore” taxa are classed as “riverine” and “nearshore/oceanic” taxa are classed as “nearshore”\r - **habitat2** - as Habitat, but “riverine/nearshore” taxa are classed as “nearshore” and “nearshore/oceanic” taxa are classed as “oceanic”\r - **feedingr** - how the species usually acquires its prey\r - **feeding1** - as Feeding behaviour, but all “raptorial/suction” taxa are classed as “raptorial”\r - **feeding2** - as Feeding behaviour, but all “raptorial/suction” taxa are classed as “suction”\r - **bodysize** - maximum mass the species obtains\r - **divetype** - the type of dive the species usually makes (Shallow: estimated maximum dive depth ≤ 100 m. Mid: estimated maximum dive depth ~500 m. Deep: estimated maximum dive depth ~1000m. Verydeep: can dive well in excess of 1000 m.)\r - **hearingtype** - the type of hearing used by the species \r - **PC1 - PC68** - Principal component (PC) scores from principal components analysis. These are the PCs that explain up to 95% of the variance in cochlear shape.""" ; dc1:format "CSV" ; dc1:title "Odontocete cochlear landmark data " ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NMB10131 in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NMB10131" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK1933.15_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUK1933.15_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK_1846.12.15.6_2 in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUK_1846.12.15.6_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK1965.3.30.1_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUK1965.3.30.1_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK1992.263_3_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUK1992.263_3" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUKSW1934.31_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title " Landmarks for NHMUKSW1934.31_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK1934.51_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title " Landmarks for NHMUK1934.51_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NMVC27654_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NMVC27654_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK1933.17_2 in .pts format" ; dc1:format "PTS" ; dc1:title " Landmarks for NHMUK1933.17_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "This is required to build `odontocete-data-landmarks.csv` and `odontocete-data-linear.csv`. Details are in the metadata for these files." ; dc1:format "CSV" ; dc1:title "Metadata for analyses" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUKSW1934.32_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUKSW1934.32_2 " ; dcat:accessURL . a dcat:Distribution ; dc1:description "Includes information on the sex, origin, skull length (condylobasal length in mm) of each specimen plus the side of the head the cochlea came from" ; dc1:format "CSV" ; dc1:title "Data on specimens of Phocoena phocoena" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK_1873.6.3.45_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUK_1873.6.3.45_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description "Landmarks for Phocoena-phocoena_NHMUK92.265_2_reflected in .pts format" ; dc1:format "PTS" ; dc1:title "Landmarks for NHMUK92.265_2" ; dcat:accessURL . a dcat:Distribution ; dc1:description """.ply files for all cochleae scans with permissions. Note that 8 scans are excluded because we did not have permission to share them. These scans are:\r \r - Kogia-breviceps_NMVC24976_2_reflected.ply\r - Lipotes-vexillifer_AMNH57333_reflected.ply\r - Mesoplodon-grayi_NMVC31378_2_reflected.ply\r - Monodon-monoceros_AMNH73315_reflected.ply\r - Phocoena-phocoena_NMVC27654_2_reflected.ply\r - Platanista-gangetica_NMVC27417.2_2.ply\r - Steno-bredanensis_NMVC36961_3_reflected.ply\r - Tasmacetus-shepherdi_NMVC37967.6_2.ply""" ; dc1:format "ZIP" ; dc1:title "Martins et al PLY files.zip" ; dcat:accessURL ; dcat:byteSize 260613786.0 ; dcat:mediaType "application/zip" .