Data from the "Back to the water" project
Datos y Recursos
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CSV
fulldata_combined.csv
This is the data used for analyses in paper 1. species - species name tl -...
3899 records
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RDS
imputed_data_wZBL.RDS
Large RDS file containing the imputed body size data used in all analyses.
Unknown size
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TRE
full_wZBL.tre
Phylogeny for Cetacea, containing only the species included in the analyses....
Unknown size
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CSV
Total-length-data-from-literature.csv
Raw total length data, for living and fossil species, taken from the...
3259 records
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TXT
References_Total-length-data-from-literature.txt
Reference list for entries in the references column of the...
Unknown size
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CSV
Extant-proxy-measurement-data.csv
Raw data for total length proxy measurements taken from extant specimens at...
372 records
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CSV
Fossil-proxy-measurement-data.csv
Raw data for proxy measurements to estimate total length from fossil taxa,...
268 records
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TXT
References_Fossil-proxy-measurement-data.txt
Reference list for entries in the references column of the...
Unknown size
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TRE
final_tree_cetacea.tre
Phylogeny for Cetacea from Lloyd & Slater (2021). This tree belongs to...
Unknown size
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TRE
full.tre
Phylogeny for Cetacea, containing only the species included in the analyses....
Unknown size
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TRE
baleen_wZBL.tre
Phylogeny for baleen whales, containing only the species included in the...
Unknown size
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TRE
extant.tre
Phylogeny for extant Cetacea, containing only the species included in the...
Unknown size
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noarchaeo.tre
Phylogeny for Cetacea excluding Archaeocetes, containing only the species...
Unknown size
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TRE
noarchaeo_wZBL.tre
Phylogeny for Cetacea excluding Archaeocetes, containing only the species...
Unknown size
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TRE
noextant.tre
Phylogeny for Cetacea excluding living taxa, containing only the species...
Unknown size
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TRE
noextant_wZBL.tre
Phylogeny for Cetacea excluding living taxa, containing only the species...
Unknown size
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TRE
noimput_wZBL.tre
Phylogeny for Cetacea excluding species for which we had to imput total...
Unknown size
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TRE
toothed.tre
Phylogeny for toothed whales, containing only the species included in the...
Unknown size
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TRE
toothed_wZBL.tre
Phylogeny for toothed whales containing only the species included in the...
Unknown size
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CSV
Output from Fabric model
The output was too large for the supplemental materials so we include it here...
Unknown size
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TRE
pinniped_median_extant.tre
Extant phylogeny used in diversification analyses in paper 2.
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TRE
pinniped_median_fossil.tre
Fossil phylogeny used in diversification analyses in paper 2.
Unknown size
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TRE
pinniped_median_noanc.tre
Full phylogeny without sampled ancestors used in diversification analyses in...
Unknown size
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TRE
pinniped_median_fossil_noanc.tre
Fossil phylogeny without sampled ancestors used in diversification analyses...
Unknown size
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TRE
pinniped-tree-all_9areas.tre
Full phylogeny for taxa used in biogeography analyses in paper 2.
Unknown size
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TRE
pinniped-tree-extant_9areas.tre
Extant phylogeny for taxa used in biogeography analyses in paper 2.
Unknown size
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TRE
pinniped-tree-fossil_9areas.tre
Fossil phylogeny for taxa used in biogeography analyses in paper 2.
Unknown size
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TXT
pinniped-all-geography_9areas.txt
Geography file for all taxa used in biogeography analyses in paper 2.
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TXT
pinniped-extant-geography_9areas.txt
Geography file for extant taxa used in biogeography analyses in paper 2.
Unknown size
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TXT
pinniped-fossil-geography_9areas.txt
Geography file for fossil taxa used in biogeography analyses in paper 2.
Unknown size
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TXT
timeperiods-all_9areas.txt
Time periods for stratified time biogeography analyses in paper 2.
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TXT
pinniped_areas_new_GB_phylip-JRule_edit-nocomments.txt
Raw geography data for biogeography analyses in paper 2.
Unknown size
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CSV
DEC-all-node-probabilities.csv
All node probabilities from the DEC model for all taxa. node = node number...
119 records
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CSV
DECJ-all-node-probabilities.csv
All node probabilities from the DEC+J model for all taxa. node = node number...
119 records
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PNG
node-labels-tree.png
Tree with node numbers for use in interpreting DEC-all-node-probabilities.csv...
Unknown size
Paper 1
(23 resources)Paper 2
(18 resources)Cite this as
Información Adicional
Campo | Valor |
---|---|
Primary contributors |
Park, Travis
(
0000-0002-9492-8859);
Burin, Gustavo;
Slater, Graham J;
Cooper, Natalie
(
0000-0003-4919-8655)
|
Other contributors |
|
Última actualización | 17 de octubre de 2023 |
Last resource update | 17 de octubre de 2023 (README_PAPER2.md) |
Creado | 10 de mayo de 2022 |
Licencia | Creative Commons Attribution |